PPDB

The Plant Proteome Database

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AT4G40040.1   Histone superfamily protein

Lab Annot. histone H3
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone
Curated Location nucleus
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G40040.3 11Arabidopsis thaliana8E-961361001000 (0)C
AT5G10980.1 11Arabidopsis thaliana8E-9613610010014 (14)C
AT4G40030.1 11Arabidopsis thaliana8E-9613610010014 (14)C
Os06g04030.1 7Oryza sativa8E-9613610010010 (10)C
Os03g27310.2 7Oryza sativa8E-9613610010010 (10)C
Os03g27310.1 7Oryza sativa8E-9613610010010 (10)C
GRMZM2G171387_P01 3.21Zea mays8E-9613610010027 (27)C
Zm00001eb018990_P002 agpv5Zea mays8E-961361001000 (0)C
Zm00001eb018990_P003 agpv5Zea mays8E-961361001000 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBFD_NFYB_HMF(1) CENP-S(1) CENP-T_C(1) Histone(1) PAF(1) TFIID-31kDa(1)
TargetP: Chloroplast (Class 4 C0.651; M0.357; S0.019; _0.107)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 136 aa (-cTP 112)
Molecular Weight 15.41 kDA(-cTP 12.81)
PI 11.15(-cTP 10.58)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2243Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2309Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)

Comparative Proteomics Data


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