PPDB

PPDB	The Plant Proteome Database

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AT4G40030.1 Histone superfamily protein

Lab Annot.

histone H3
Mapman: 28.1.3 DNA.synthesis/chromatin structure.histone

Curated Location

nucleus

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G40040.2 11 Arabidopsis thaliana 8E-96 136 100 100 14 (14) C
AT4G40030.4 11 Arabidopsis thaliana 8E-96 136 100 100 0 (0) C
AT4G40040.1 11 Arabidopsis thaliana 8E-96 136 100 100 14 (14) C
Os03g27310.1 7 Oryza sativa 8E-96 136 100 100 10 (10) C
Os03g27310.2 7 Oryza sativa 8E-96 136 100 100 10 (10) C
Os06g04030.1 7 Oryza sativa 8E-96 136 100 100 10 (10) C
GRMZM2G176358_P03 3.21 Zea mays 8E-96 136 100 100 28 (27) C
GRMZM2G118355_P03 3.21 Zea mays 8E-96 136 100 100 28 (27) C
v1_GRMZM2G118355_P03 4a53 Zea mays 8E-96 136 100 100 37 (36) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CBFD_NFYB_HMF(1) CENP-S(1) CENP-T_C(1) Histone(1) PAF(1) TFIID-31kDa(1)
TargetP:	Chloroplast (Class 4 C0.651; M0.357; S0.019; _0.107)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	136 aa (-cTP 112)
Molecular Weight	15.41 kDA(-cTP 12.81)
PI	11.15(-cTP 10.58)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1125	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1176	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1621	Detail								[A. thaliana]		m48
1622	Detail								[A. thaliana]		m48
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2030	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2243	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2309	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

19995728(proplastid (Brassica napus))
18814325(cotyledons)

Comparative Proteomics Data