PPDB

 The Plant Proteome Database

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AT4G39990.1   RAB GTPase homolog A4B
Lab Annot. RAS GTP binding protein (ATGB3/ATRAB11G/ATRABA4B)
Mapman: 30.5 signalling.G-proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G65270.1 11Arabidopsis thaliana2E-134226799041 (40)_
AT5G47960.1 11Arabidopsis thaliana4E-108215718616 (16)S
AT3G12160.1 11Arabidopsis thaliana8E-10822069828 (8)S
Os10g23100.1 7Oryza sativa3E-120224738626 (26)S
Os09g10940.1 7Oryza sativa5E-11522471839 (9)_
Os01g62950.1 7Oryza sativa1E-9121162797 (7)_
GRMZM2G122805_P01 3.21Zea mays1E-12222475874 (4)S
v1_GRMZM2G122805_P01 4a53Zea mays1E-12222475875 (5)S
Zm00001eb223850_P001 agpv5Zea mays1E-12222475870 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_14(1) AAA_16(1) AAA_22(1) Arf(1) DUF3873(1) DUF5847(1) GTP_EFTU(1) Gtr1_RagA
TargetP: Cytoplasm (Class 3 C0.021; M0.366; S0.192; _0.792)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 224 aa (-cTP 200)
Molecular Weight 24.41 kDA(-cTP )
PI 5.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(UNKNOWN-LOPIT-callus)
17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21826108(SYP trans-Golgi-filtered)
21173025(root proteome)

Comparative Proteomics Data

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