PPDB

PPDB	The Plant Proteome Database

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AT4G39620.2 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

PPR5 - homologue of maize PPR5
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

PeptideAtlas POGS Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G39620.1 11 Arabidopsis thaliana 0 502 100 100 2 (2) C
AT1G74850.1 11 Arabidopsis thaliana 4E-51 398 27 50 178 (125) C
AT3G53170.3 11 Arabidopsis thaliana 1E-50 350 30 49 0 (0) C
Os02g51480.1 7 Oryza sativa 0 397 67 81 1 (1) C
Os06g07550.1 7 Oryza sativa 3E-48 413 28 47 0 (0) C
Os03g19650.3 7 Oryza sativa 8E-45 376 27 46 13 (13) C
Zm00001eb194340_P001 agpv5 Zea mays 0 419 64 80 0 (0) C
GRMZM2G025409_P01 3.21 Zea mays 0 419 64 80 29 (29) C
v1_GRMZM2G025409_P01 4a53 Zea mays 0 419 64 80 19 (19) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	C_Hendra(3) ECSIT(4) MRP-S27(2) PPR(11) PPR_1(9) PPR_2(9) PPR_3(9) PPR_long(4) T
TargetP:	Chloroplast (Class 4 C0.734; M0.044; S0.016; _0.387)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	510 aa (-cTP 463)
Molecular Weight	58.94 kDA(-cTP 53.46)
PI	9.42(-cTP 9.33)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data