PPDB

PPDB	The Plant Proteome Database

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AT4G39540.1 shikimate kinase 2

Lab Annot.

shikimate kinase protein
Mapman: 13.1.6.1.5 amino acid metabolism.synthesis.aromatic aa.chorismate.shikimate kinase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G39540.2 11 Arabidopsis thaliana 0 300 100 100 22 (15) _
AT4G39540.3 11 Arabidopsis thaliana 0 308 97 97 21 (14) _
AT2G21940.5 11 Arabidopsis thaliana 6E-152 308 73 80 0 (0) _
Os04g54800.1 7 Oryza sativa 5E-84 217 59 76 0 (0) C
Os06g12150.1 7 Oryza sativa 2E-82 226 56 73 0 (0) M
Os02g51410.1 7 Oryza sativa 3E-82 227 57 74 0 (0) M
GRMZM2G004590_P01 3.21 Zea mays 9E-86 279 50 69 0 (0) C
Zm00001eb069000_P001 agpv5 Zea mays 9E-86 279 50 69 0 (0) C
Zm00001eb069000_P003 agpv5 Zea mays 9E-86 279 50 69 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_16(1) AAA_17(1) AAA_18(1) AAA_22(1) AAA_33(1) AAA_5(2) CoaE(1) Cytidy
TargetP:	Cytoplasm (Class 5 C0.337; M0.221; S0.010; _0.474)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	300 aa (-cTP 298)
Molecular Weight	33.78 kDA(-cTP )
PI	8.44(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data