PPDB

PPDB	The Plant Proteome Database

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AT4G39420.1 spatacsin carboxy-terminus protein

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G39420.4 11 Arabidopsis thaliana 0 2429 99 99 0 (0) _
AT4G39420.2 11 Arabidopsis thaliana 0 2432 99 99 9 (8) _
AT4G39420.3 11 Arabidopsis thaliana 0 2392 99 99 0 (0) _
Os01g08750.2 7 Oryza sativa 0 2466 51 67 0 (0) _
Os01g08750.1 7 Oryza sativa 0 2466 51 67 0 (0) _
Os01g08750.3 7 Oryza sativa 0 509 71 85 0 (0) M
Zm00001eb062420_P001 agpv5 Zea mays 0 2468 52 68 0 (0) M
Zm00001eb062420_P003 agpv5 Zea mays 0 2470 52 68 0 (0) M
Zm00001eb062420_P002 agpv5 Zea mays 0 2466 52 68 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Spatacsin_C(1)
TargetP:	Cytoplasm (Class 2 C0.112; M0.127; S0.025; _0.773)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	2513 aa (-cTP 2435)
Molecular Weight	280.33 kDA(-cTP )
PI	5.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2321	Detail								leaf [A. thaliana]

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data