PPDB

 The Plant Proteome Database

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AT4G39220.1   Rer1 family protein
Lab Annot. Rer1 protein
Mapman: 29.3.4.1 protein.targeting.secretory pathway.ER
Curated Location
TAIR curated location: Golgi apparatus
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G39220.2 11Arabidopsis thaliana1E-1411911001000 (0)_
AT2G21600.1 11Arabidopsis thaliana1E-11819684891 (1)_
AT2G23310.1 11Arabidopsis thaliana1E-7818061750 (0)_
Os01g01640.1 7Oryza sativa7E-94162808918 (18)_
Os06g49460.1 7Oryza sativa2E-9317472831 (1)_
Os08g21760.1 7Oryza sativa3E-7616964780 (0)_
v1_GRMZM2G135756_P01 4a53Zea mays5E-9818670820 (0)_
Zm00001eb227430_P001 agpv5Zea mays5E-9818670820 (0)_
GRMZM2G135756_P01 3.21Zea mays5E-9818670820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rer1(1)
TargetP: Cytoplasm (Class 2 C0.010; M0.170; S0.021; _0.954)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 191 aa (-cTP 173)
Molecular Weight 21.98 kDA(-cTP )
PI 9.22(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT

* For details about the exprimental sources click here.

Published Proteomics Data

 17660356(tonoplast (Brassica oleracea buds))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help