PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G38930.1   Ubiquitin fusion degradation UFD1 family protein
Lab Annot. Ubiquitin fusion degradation UFD1 protein
Mapman: 29.5.11 protein.degradation.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38930.4 11Arabidopsis thaliana03111001000 (0)_
AT4G38930.3 11Arabidopsis thaliana031598980 (0)_
AT4G38930.2 11Arabidopsis thaliana031598982 (2)_
Os04g48770.1 6Oryza sativa4E-13932462720 (0)_
Os02g08480.1 7Oryza sativa2E-138319647410 (10)_
Os04g48770.2 7Oryza sativa5E-10427059700 (0)_
Zm00001eb206740_P001 agpv5Zea mays2E-14532066770 (0)_
GRMZM2G037185_P01 3.21Zea mays2E-14532066772 (2)_
v1_GRMZM2G037185_P01 4a53Zea mays2E-14532066772 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF5088(2) UFD1(1)
TargetP: Cytoplasm (Class 2 C0.044; M0.251; S0.056; _0.879)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 311 aa (-cTP 289)
Molecular Weight 34.58 kDA(-cTP )
PI 5.45(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2601Detail       Rosettes [A. thaliana] total leaf tissue fmtclpc1
2603Detail       Rosettes [A. thaliana] total leaf tissue clpc1

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help