PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G38810.1   Calcium-binding EF-hand family protein
Lab Annot. calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38810.2 11Arabidopsis thaliana026510010021 (3)_
AT5G28830.1 11Arabidopsis thaliana3E-1624326516 (4)_
Os10g09850.1 7Oryza sativa5E-8824751720 (0)_
Os03g14590.2 7Oryza sativa7E-8025152720 (0)_
Os03g14590.3 7Oryza sativa7E-8025152720 (0)_
v1_GRMZM2G048549_P01 4a53Zea mays8E-9625853720 (0)_
Zm00001eb224230_P001 agpv5Zea mays8E-9625853720 (0)_
GRMZM2G048549_P01 3.21Zea mays8E-9625853720 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pex19(2) Terpene_syn_C_2(2)
TargetP: Cytoplasm (Class 2 C0.071; M0.129; S0.068; _0.844)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 265 aa (-cTP 191)
Molecular Weight 28.97 kDA(-cTP )
PI 4.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help