PPDB

PPDB	The Plant Proteome Database

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AT4G38780.1 pre-mRNA-processing-splicing factor-like protein

Lab Annot.

splicing factor strong similarity to Prp8; Mov34/MPN/PAD-1
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G80070.1 11 Arabidopsis thaliana 0 2365 91 94 90 (75) C
Os05g07050.1 7 Oryza sativa 0 2315 88 94 30 (30) C
Os06g07080.1 7 Oryza sativa 0 1099 90 95 0 (0) M
GRMZM2G433801_P01 3.21 Zea mays 0 2318 88 94 21 (20) C
Zm00001eb271550_P003 agpv5 Zea mays 0 2318 88 94 0 (0) C
v1_GRMZM2G433801_P01 4a53 Zea mays 0 2318 88 94 25 (25) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	JAB(1) PRO8NT(1) PROCN(1) PROCT(1) PRP8_domainIV(1) RRM_4(1) U5_2-snRNA_bdg(1) U
TargetP:	Cytoplasm (Class 5 C0.302; M0.252; S0.105; _0.480)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	2332 aa (-cTP 2283)
Molecular Weight	271.51 kDA(-cTP )
PI	8.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1345	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 1)
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1507	Detail								[A. thaliana]		wild-type
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2301	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)

Comparative Proteomics Data