PPDB

The Plant Proteome Database

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AT4G38760.1   nucleoporin (DUF3414)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G10843.3 11Arabidopsis thaliana4E-1612541510 (0)M
AT4G10843.4 11Arabidopsis thaliana4E-1612541510 (0)M
AT4G10843.2 11Arabidopsis thaliana1E-159547520 (0)M
Os10g06610.1 7Oryza sativa3E-9866234540 (0)S
Zm00001eb026650_P001 agpv5Zea mays0133135540 (0)S
GRMZM2G134985_P01 3.21Zea mays3E-169109234541 (1)S
v1_GRMZM2G134985_P01 4a53Zea mays3E-1691092345414 (14)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cse1(1)
TargetP: Cytoplasm (Class 2 C0.084; M0.098; S0.157; _0.829)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 1965 aa (-cTP 1957)
Molecular Weight 219.49 kDA(-cTP )
PI 5.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

21841088(mitochondria (2DE native gel))

Comparative Proteomics Data


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