PPDB

The Plant Proteome Database

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AT4G38580.1   farnesylated protein 6

Lab Annot. HMA protein
Mapman: 15.2 metal handling.binding, chelation and storage
Curated Location plasma membrane
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38580.2 11Arabidopsis thaliana4E-1111531001000 (0)_
AT4G35060.1 11Arabidopsis thaliana8E-8215474871 (1)_
AT5G66110.1 11Arabidopsis thaliana9E-6613571820 (0)_
Os04g17100.1 7Oryza sativa2E-6715564780 (0)_
Os04g17100.2 7Oryza sativa1E-6013068820 (0)S
Os03g06080.1 7Oryza sativa3E-5815558720 (0)_
Zm00001eb086700_P002 agpv5Zea mays3E-6715565790 (0)_
v1_GRMZM2G085086_P01 4a53Zea mays3E-6715565790 (0)_
GRMZM2G085086_P01 3.21Zea mays3E-6715565790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CoV_NSP2_N(1) HMA(1)
TargetP: Cytoplasm (Class 2 C0.158; M0.110; S0.105; _0.904)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 153 aa (-cTP 105)
Molecular Weight 17.02 kDA(-cTP )
PI 9.26(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help