PPDB

The Plant Proteome Database

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AT4G38490.1   transmembrane protein

Lab Annot. SecE2
Mapman: 29.3.3 protein.targeting.chloroplast
Curated Location envelope-inner (Pubmed: 26406904 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os09g27690.6 7Oryza sativa1E-319159790 (0)M
Os09g27690.2 7Oryza sativa3E-319159800 (0)C
Os09g27690.5 7Oryza sativa3E-319159800 (0)C
v1_GRMZM2G151299_P01 4a53Zea mays6E-287860845 (5)C
GRMZM2G151299_P01 3.21Zea mays6E-287860845 (5)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SecE(2)
TargetP: Mitochondria (Class 5 C0.144; M0.243; S0.025; _0.095)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 153 aa (-cTP 101)
Molecular Weight 16.72 kDA(-cTP )
PI 9.78(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help