PPDB

 The Plant Proteome Database

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AT4G38420.1   SKU5 similar 9
Lab Annot.
Mapman: 26.7 misc.oxidases - copper, flavone etc.
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38420.3 11Arabidopsis thaliana04811001000 (0)S
AT4G38420.2 11Arabidopsis thaliana04541001000 (0)S
AT4G28090.1 11Arabidopsis thaliana054975870 (0)S
Os06g46500.1 7Oryza sativa0526637910 (10)S
Os04g47400.1 7Oryza sativa054062750 (0)S
Os07g32660.1 7Oryza sativa053062779 (9)S
Zm00001eb224610_P001 agpv5Zea mays052763780 (0)S
v1_GRMZM2G076985_P01 4a53Zea mays0527637818 (18)S
GRMZM2G076985_P01 3.21Zea mays0527637816 (16)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cu-oxidase(1) Cu-oxidase_2(3) Cu-oxidase_3(2) Lectin_like(1)
TargetP: Secreted (Class 2 C0.005; M0.099; S0.884; _0.265)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 549 aa (-cTP 537)
Molecular Weight 62.49 kDA(-cTP )
PI 9.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help