PPDB

PPDB	The Plant Proteome Database

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AT4G38130.1 histone deacetylase 1

Lab Annot.

histone deacetylase 1
Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

TAIR curated location: nucleus15749761,16763149

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G38130.2 11 Arabidopsis thaliana 0 468 100 100 3 (2) _
AT5G63110.1 11 Arabidopsis thaliana 0 435 65 79 0 (0) _
AT3G44680.1 11 Arabidopsis thaliana 0 402 59 77 0 (0) _
Os06g38470.1 7 Oryza sativa 0 502 77 85 2 (2) _
Os06g38470.3 7 Oryza sativa 0 450 83 89 0 (0) _
Os06g38470.2 7 Oryza sativa 0 450 83 89 0 (0) _
v1_GRMZM2G172883_P02 4a53 Zea mays 0 506 76 84 4 (4) _
Zm00001eb205290_P003 agpv5 Zea mays 0 506 76 84 0 (0) _
GRMZM2G172883_P02 3.21 Zea mays 0 506 76 84 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CENP-B_dimeris(1) Hist_deacetyl(1)
TargetP:	Cytoplasm (Class 1 C0.103; M0.062; S0.055; _0.957)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	501 aa (-cTP 427)
Molecular Weight	56.02 kDA(-cTP )
PI	5.14(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1582	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data