PPDB

PPDB	The Plant Proteome Database

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AT4G38030.1 Rhamnogalacturonate lyase family protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G22620.3 11 Arabidopsis thaliana 0 655 57 72 0 (0) S
AT2G22620.1 11 Arabidopsis thaliana 0 655 57 72 0 (0) S
AT4G37950.1 11 Arabidopsis thaliana 0 665 55 69 0 (0) M
Os08g44020.1 7 Oryza sativa 0 625 53 68 0 (0) _
Os08g44020.2 7 Oryza sativa 0 625 53 68 0 (0) _
Os08g44020.3 7 Oryza sativa 0 625 53 68 0 (0) _
Zm00001eb039820_P001 agpv5 Zea mays 0 673 50 65 0 (0) M
Zm00001eb039820_P002 agpv5 Zea mays 0 627 52 68 0 (0) M
v1_GRMZM2G154124_P01 4a53 Zea mays 0 651 51 66 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CarbopepD_reg_2(2) CarboxypepD_reg(1) CBM-like(1) DUF2012(2) fn3_3(2) Rhamnogal_
TargetP:	Secreted (Class 1 C0.008; M0.057; S0.972; _0.007)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	667 aa (-cTP 630)
Molecular Weight	76.62 kDA(-cTP )
PI	9.34(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(contaminants cell cycle interactome (cell culture))

Comparative Proteomics Data