PPDB

PPDB	The Plant Proteome Database

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AT4G37950.1 Rhamnogalacturonate lyase family protein

Lab Annot.

Rhamnogalacturonate lyase protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G37950.2 11 Arabidopsis thaliana 0 678 100 100 0 (0) M
AT2G22620.3 11 Arabidopsis thaliana 0 686 65 77 0 (0) S
AT2G22620.1 11 Arabidopsis thaliana 0 686 65 77 0 (0) S
Os08g44020.1 7 Oryza sativa 0 649 52 67 0 (0) _
Os08g44020.2 7 Oryza sativa 0 649 52 67 0 (0) _
Os08g44020.3 7 Oryza sativa 0 649 52 67 0 (0) _
Zm00001eb039820_P001 agpv5 Zea mays 0 646 54 68 0 (0) M
v1_GRMZM2G154124_P01 4a53 Zea mays 0 646 54 68 0 (0) _
GRMZM2G154124_P01 3.21 Zea mays 0 646 54 68 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CarboxypepD_reg(1) CBM-like(1) fn3_3(2) Rhamnogal_lyase(1) RhgB_N(3)
TargetP:	Mitochondria (Class 3 C0.008; M0.698; S0.053; _0.280)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	678 aa (-cTP 637)
Molecular Weight	77.33 kDA(-cTP )
PI	9.41(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data