PPDB

The Plant Proteome Database

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AT4G37920.1   endoribonuclease E-like protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G36320.1 11Arabidopsis thaliana1E-95343416750 (6)C
Os01g20110.1 7Oryza sativa8E-15434961770 (0)C
Os08g23160.1 7Oryza sativa2E-7330444580 (0)_
Os02g18940.1 7Oryza sativa3E-2913339680 (0)_
GRMZM2G136680_P01 3.21Zea mays2E-154338617911 (10)C
v1_GRMZM2G136680_P01 4a53Zea mays2E-15433861794 (4)C
Zm00001eb261690_P003 agpv5Zea mays2E-15433861790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CP_ATPgrasp_2(1) Lectin_N(2) Rubis-subs-bind(3)
TargetP: Chloroplast (Class 2 C0.823; M0.035; S0.096; _0.089)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 427 aa (-cTP 365)
Molecular Weight 48.73 kDA(-cTP 41.95)
PI 5.46(-cTP 5.15)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2291Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
12938931(Total chloroplast envelope)
15322131(Thylakoid-stripped)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help