PPDB

PPDB	The Plant Proteome Database

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AT4G37890.1 Zinc finger (C3HC4-type RING finger) family protein

Lab Annot.

Zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G37890.2 11 Arabidopsis thaliana 0 739 96 96 1 (1) _
AT2G22680.1 11 Arabidopsis thaliana 0 768 59 70 0 (0) _
AT5G65683.1 11 Arabidopsis thaliana 1E-170 777 45 60 2 (2) C
Os04g01160.1 7 Oryza sativa 3E-108 623 38 55 0 (0) M
Os03g04890.1 7 Oryza sativa 6E-54 579 30 48 0 (0) M
Os02g56280.1 7 Oryza sativa 9E-52 593 28 46 0 (0) _
Zm00001eb418990_P001 agpv5 Zea mays 4E-125 821 37 52 0 (0) _
Zm00001eb089670_P002 agpv5 Zea mays 1E-115 834 36 51 0 (0) _
Zm00001eb089670_P003 agpv5 Zea mays 2E-110 661 38 56 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	NOA36(1) PHD(1) VWA(1) VWA_2(1) VWA_3(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1)
TargetP:	Cytoplasm (Class 4 C0.108; M0.350; S0.001; _0.607)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	739 aa (-cTP 692)
Molecular Weight	81.48 kDA(-cTP )
PI	9.61(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1467	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data