PPDB

The Plant Proteome Database

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AT4G37890.1   Zinc finger (C3HC4-type RING finger) family protein

Lab Annot. Zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G37890.2 11Arabidopsis thaliana073996961 (1)_
AT2G22680.1 11Arabidopsis thaliana076859700 (0)_
AT5G65683.1 11Arabidopsis thaliana1E-17077745602 (2)C
Os04g01160.1 7Oryza sativa3E-10862338550 (0)M
Os03g04890.1 7Oryza sativa6E-5457930480 (0)M
Os02g56280.1 7Oryza sativa9E-5259328460 (0)_
Zm00001eb418990_P001 agpv5Zea mays4E-12582137520 (0)_
Zm00001eb089670_P002 agpv5Zea mays1E-11583436510 (0)_
Zm00001eb089670_P003 agpv5Zea mays2E-11066138560 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: NOA36(1) PHD(1) VWA(1) VWA_2(1) VWA_3(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1)
TargetP: Cytoplasm (Class 4 C0.108; M0.350; S0.001; _0.607)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 739 aa (-cTP 692)
Molecular Weight 81.48 kDA(-cTP )
PI 9.61(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help