PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G37130.1   hydroxyproline-rich glycoprotein family protein

Lab Annot. Nucleoporin Nup58
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location nucleus (Pubmed: 21189294 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os09g28019.1 7Oryza sativa4E-13043051664 (4)C
Os03g55660.1 7Oryza sativa1E-6736938520 (0)C
GRMZM2G024775_P01 3.21Zea mays1E-12242948650 (0)C
Zm00001eb314700_P002 agpv5Zea mays1E-12242948650 (0)C
v1_GRMZM2G024775_P01 4a53Zea mays1E-12242948652 (2)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Nucleoporin_FG(4)
TargetP: Chloroplast (Class 5 C0.534; M0.449; S0.010; _0.124)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 513 aa (-cTP 479)
Molecular Weight 56.54 kDA(-cTP 52.57)
PI 8.87(-cTP 8.88)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help