PPDB

 The Plant Proteome Database

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AT4G36800.1   RUB1 conjugating enzyme 1
Lab Annot. RUB1 conjugating enzyme 1
Mapman: 29.5.11.3 protein.degradation.ubiquitin.E2
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G36800.2 11Arabidopsis thaliana9E-13918410010057 (30)_
AT2G18600.2 11Arabidopsis thaliana3E-11718585910 (0)_
AT2G18600.1 11Arabidopsis thaliana3E-11718585910 (0)_
Os10g11260.1 7Oryza sativa2E-110183818913 (13)_
Os10g11260.2 7Oryza sativa5E-103183788513 (13)_
Os08g28680.1 7Oryza sativa9E-10218473845 (5)_
GRMZM2G102421_P04 3.21Zea mays5E-108183798710 (4)_
GRMZM2G102421_P01 3.21Zea mays5E-108183798710 (4)_
v1_GRMZM2G102421_P03 4a53Zea mays5E-10818379877 (7)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RWD(1) UQ_con(1)
TargetP: Cytoplasm (Class 5 C0.148; M0.347; S0.030; _0.506)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 184 aa (-cTP 164)
Molecular Weight 20.79 kDA(-cTP )
PI 7.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2284Detail        [A. thaliana] Clp C1 WT
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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