PPDB

 The Plant Proteome Database

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AT4G36700.1   RmlC-like cupins superfamily protein
Lab Annot. RmlC-like cupins superprotein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G18540.2 11Arabidopsis thaliana4E-15245655690 (0)S
AT2G18540.1 11Arabidopsis thaliana8E-15245655694 (3)S
AT2G28490.1 11Arabidopsis thaliana4E-42416294728 (20)S
Os03g10110.1 7Oryza sativa8E-8647935550 (0)_
Os03g21790.1 7Oryza sativa4E-4042228430 (0)M
Os03g46100.1 7Oryza sativa3E-1742720370 (0)S
Zm00001eb401000_P002 agpv5Zea mays3E-7744236550 (0)M
Zm00001eb401000_P004 agpv5Zea mays3E-7744236550 (0)M
Zm00001eb401000_P001 agpv5Zea mays3E-7744236550 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CPSF100_C(2) Cupin_1(2) Cupin_2(2) FliMN_C(1) Rtf2(2) U79_P34(2)
TargetP: Secreted (Class 1 C0.003; M0.036; S0.995; _0.023)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 522 aa (-cTP 501)
Molecular Weight 59.08 kDA(-cTP )
PI 5.43(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
17293592(total seedlings û light and dark grown)
18599647(seed proteome)
18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help