PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G36630.1 Vacuolar sorting protein 39

Lab Annot.

EMB2754 (EMBRYO DEFECTIVE 2754); binding / small GTPase regulator
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G36630.2 11 Arabidopsis thaliana 0 901 100 100 0 (0) _
Os03g50740.2 7 Oryza sativa 0 1003 56 73 4 (4) _
Os03g50740.1 7 Oryza sativa 0 1003 56 73 4 (4) _
Os03g50740.3 7 Oryza sativa 0 938 56 73 4 (4) _
Zm00001eb055180_P003 agpv5 Zea mays 0 1011 56 73 0 (0) _
Zm00001eb055180_P004 agpv5 Zea mays 0 1011 56 73 0 (0) _
Zm00001eb055180_P002 agpv5 Zea mays 0 1011 56 73 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AlaDh_PNT_N(1) ANAPC3(2) Clathrin(3) CNH(1) PPR(3) TPR_1(3) TPR_14(4) TPR_16(2)
TargetP:	Cytoplasm (Class 3 C0.028; M0.168; S0.093; _0.680)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1000 aa (-cTP 982)
Molecular Weight	110.64 kDA(-cTP )
PI	6.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2297	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21533090(plasmodesmata-crude)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data