PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G36480.1 long-chain base1

Lab Annot.

Mapman: 11.8.1 lipid metabolism.exotics (steroids, squalene etc).sphingolipids

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G36480.2 11 Arabidopsis thaliana 0 482 100 100 1 (1) S
AT4G36480.3 11 Arabidopsis thaliana 0 335 100 100 0 (0) S
AT5G23670.1 11 Arabidopsis thaliana 6E-36 384 26 47 0 (0) S
Os02g56300.1 7 Oryza sativa 0 464 70 86 0 (0) S
Os03g14800.4 7 Oryza sativa 0 479 66 83 0 (0) S
Os03g14800.3 7 Oryza sativa 0 478 66 83 0 (0) S
GRMZM2G144985_P01 3.21 Zea mays 0 479 68 84 0 (0) S
GRMZM2G144985_P04 3.21 Zea mays 0 479 68 84 0 (0) S
Zm00001eb010860_P001 agpv5 Zea mays 0 479 68 84 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Aminotran_1_2(1) Cys_Met_Meta_PP(1) OKR_DC_1(1) RELT(1)
TargetP:	Secreted (Class 2 C0.099; M0.041; S0.733; _0.118)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	2 TMs
TAT position:
Length	482 aa (-cTP 472)
Molecular Weight	53.14 kDA(-cTP )
PI	7.15(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1986	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))

Comparative Proteomics Data