PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G36400.1   FAD-linked oxidases family protein
Lab Annot. D-2-HYDROXYGLUTARATE DEHYDROGENASE (D2HGDH)
Mapman: 13.2.3.5 amino acid metabolism.degradation.aspartate family.lysine
Curated Location mitochondria (Pubmed: 19586914 21296880 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G36400.2 11Arabidopsis thaliana055910010055 (34)M
AT5G06580.1 11Arabidopsis thaliana4E-37474264515 (6)C
Os07g08950.1 7Oryza sativa048571866 (6)M
Os07g06890.1 7Oryza sativa6E-0914029450 (0)M
Zm00001eb302200_P002 agpv5Zea mays043272870 (0)M
Zm00001eb302200_P004 agpv5Zea mays042968850 (0)M
v1_GRMZM2G117369_P01 4a53Zea mays038869862 (2)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FAD-oxidase_C(1) FAD_binding_4(1)
TargetP: Mitochondria (Class 2 C0.098; M0.804; S0.013; _0.173)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 559 aa (-cTP 529)
Molecular Weight 61.44 kDA(-cTP )
PI 6.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

 18385124(mitochondria - leaf and suspension cell)
18385124(mitochondria)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help