PPDB

 The Plant Proteome Database

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AT4G36220.1   ferulic acid 5-hydroxylase 1
Lab Annot. cytochrome P450 84A1 (CYP84A1) / ferulate-5-hydroxylase (FAH1)
Mapman: 16.2.1.8 secondary metabolism.phenylpropanoids.lignin biosynthesis.F5H
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G04330.1 11Arabidopsis thaliana049065790 (0)S
AT3G26310.1 11Arabidopsis thaliana1E-11651237585 (2)S
AT5G07990.1 11Arabidopsis thaliana4E-11651436556 (5)M
Os10g36848.1 7Oryza sativa053661759 (9)_
Os03g02180.1 7Oryza sativa047557730 (0)S
Os06g24180.1 7Oryza sativa2E-15447649650 (0)_
AC210173.4_FGP005 3.21Zea mays052163770 (0)S
v1_AC210173.4_FGP005 4a53Zea mays052163770 (0)S
Zm00001eb220390_P001 agpv5Zea mays052562760 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: p450(1)
TargetP: Chloroplast (Class 5 C0.384; M0.020; S0.315; _0.368)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 520 aa (-cTP 456) (-lTP 394)
Molecular Weight 58.72 kDA(-cTP 51.48)(-lTP 44.60)
PI 6.35(-cTP 5.75)(-lTP 5.396)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(ER-LOPIT-callus)
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data

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