PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G36020.1 cold shock domain protein 1

Lab Annot.

RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding (CSDP1)
Mapman: 20.2.2 stress.abiotic.cold

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G36020.3 11 Arabidopsis thaliana 0 299 100 100 0 (0) _
AT4G36020.2 11 Arabidopsis thaliana 5E-159 299 80 81 0 (0) _
AT2G17870.1 11 Arabidopsis thaliana 2E-92 314 59 69 29 (15) _
Os02g02870.1 7 Oryza sativa 4E-42 240 44 56 48 (48) _
Os01g36570.1 7 Oryza sativa 2E-19 78 52 67 0 (0) _
Os03g60600.1 7 Oryza sativa 3E-18 216 33 40 0 (0) C
Zm00001eb208310_P003 agpv5 Zea mays 3E-41 185 50 63 0 (0) M
v1_GRMZM2G389768_P02 4a53 Zea mays 4E-41 186 50 62 87 (87) M
Zm00001eb208310_P001 agpv5 Zea mays 4E-41 186 50 62 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CSD(1) gerPA(5) OB_RNB(1) zf-CCHC(7) zf-CCHC_3(7) zf-CCHC_4(7) zf-CCHC_5(7)
TargetP:	Cytoplasm (Class 2 C0.093; M0.150; S0.060; _0.831)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	299 aa (-cTP 229)
Molecular Weight	30.09 kDA(-cTP )
PI	8.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2224	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 strep
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2316	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data