PPDB

 The Plant Proteome Database

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AT4G35800.1   RNA polymerase II large subunit
Lab Annot. DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G35800.2 11Arabidopsis thaliana018391001000 (0)_
AT5G60040.1 11Arabidopsis thaliana2E-17691238540 (0)_
AT5G60040.2 11Arabidopsis thaliana5E-17292937530 (0)_
Os05g05860.1 7Oryza sativa01696818913 (13)_
Os08g05940.1 7Oryza sativa035087933 (3)_
Os04g41490.1 7Oryza sativa094937540 (0)_
GRMZM2G080176_P01 3.21Zea mays094037540 (0)_
GRMZM2G044306_P01 3.21Zea mays0184981889 (9)_
Zm00001eb416050_P001 agpv5Zea mays0184981880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RNA_pol_Rpb1_1(1) RNA_pol_Rpb1_2(1) RNA_pol_Rpb1_3(1) RNA_pol_Rpb1_4(1) RNA_pol_
TargetP: Cytoplasm (Class 3 C0.071; M0.215; S0.157; _0.643)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1839 aa (-cTP 1810)
Molecular Weight 204.62 kDA(-cTP )
PI 5.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1724Detail        [A. thaliana]  
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2162Detail       leaf [A. thaliana] stroma Clp stromaP3-trap - strepII 8
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2287Detail        [A. thaliana] Clp C1 WT
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
15539469(vacuole)
18463617(suspension cells-phosphorylated proteins)
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help