PPDB

PPDB	The Plant Proteome Database

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AT4G35800.1 RNA polymerase II large subunit

Lab Annot.

DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
Mapman: 27.2 RNA.transcription

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G35800.2 11 Arabidopsis thaliana 0 1839 100 100 0 (0) _
AT5G60040.1 11 Arabidopsis thaliana 2E-176 912 38 54 0 (0) _
AT5G60040.2 11 Arabidopsis thaliana 5E-172 929 37 53 0 (0) _
Os05g05860.1 7 Oryza sativa 0 1696 81 89 13 (13) _
Os08g05940.1 7 Oryza sativa 0 350 87 93 3 (3) _
Os04g41490.1 7 Oryza sativa 0 949 37 54 0 (0) _
GRMZM2G080176_P01 3.21 Zea mays 0 940 37 54 0 (0) _
GRMZM2G044306_P01 3.21 Zea mays 0 1849 81 88 9 (9) _
Zm00001eb416050_P001 agpv5 Zea mays 0 1849 81 88 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RNA_pol_Rpb1_1(1) RNA_pol_Rpb1_2(1) RNA_pol_Rpb1_3(1) RNA_pol_Rpb1_4(1) RNA_pol_
TargetP:	Cytoplasm (Class 3 C0.071; M0.215; S0.157; _0.643)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1839 aa (-cTP 1810)
Molecular Weight	204.62 kDA(-cTP )
PI	5.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1651	Detail								leaf [A. thaliana]	plastoglobules plastoglobule	wild-type
1724	Detail								[A. thaliana]
2007	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2028	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2162	Detail								leaf [A. thaliana]	stroma Clp stroma	P3-trap - strepII 8
2215	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 trap st
2216	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 st
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15539469(vacuole)
18463617(suspension cells-phosphorylated proteins)
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data