PPDB

 The Plant Proteome Database

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AT4G35080.3   high-affinity nickel-transport family protein
Lab Annot. high-affinity nickel-transport protein
Mapman: 34.12 transport.metal
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G35080.1 11Arabidopsis thaliana038993932 (2)C
AT4G35080.2 11Arabidopsis thaliana038986862 (2)C
AT2G16800.1 11Arabidopsis thaliana5E-16940567760 (0)C
Os06g02580.1 7Oryza sativa6E-12925574849 (9)C
Os03g06090.1 7Oryza sativa1E-11628864780 (0)M
Zm00001eb004310_P001 agpv5Zea mays2E-11625171820 (0)C
v1_GRMZM2G141636_P01 4a53Zea mays2E-116251718221 (21)C
GRMZM2G141636_P01 3.21Zea mays2E-116251718222 (22)C

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DsbD_2(2) HupE_UreJ(2)
TargetP: Chloroplast (Class 1 C0.963; M0.130; S0.002; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 389 aa (-cTP 310)
Molecular Weight 41.43 kDA(-cTP 32.90)
PI 9.51(-cTP 8.83)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2145Detail       Total leaf [A. thaliana] total soluble stromawt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

 22060019(phosphoproteome - N-starved seedlings)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help