PPDB

The Plant Proteome Database

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AT4G35080.1   high-affinity nickel-transport family protein

Lab Annot. high-affinity nickel-transport protein
Mapman: 34.12 transport.metal
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G35080.3 11Arabidopsis thaliana038993932 (2)C
AT4G35080.2 11Arabidopsis thaliana036592922 (2)C
AT2G16800.1 11Arabidopsis thaliana2E-17438171810 (0)C
Os06g02580.1 7Oryza sativa9E-12925574849 (9)C
Os03g06090.1 7Oryza sativa2E-11626967800 (0)M
Zm00001eb004310_P001 agpv5Zea mays1E-11625171820 (0)C
v1_GRMZM2G141636_P01 4a53Zea mays1E-116251718221 (21)C
GRMZM2G141636_P01 3.21Zea mays1E-116251718222 (22)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DsbD_2(2) HupE_UreJ(2)
TargetP: Chloroplast (Class 1 C0.950; M0.094; S0.001; _0.037)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 5 TMs
TAT position:
Length 365 aa (-cTP 286) (-lTP 235)
Molecular Weight 38.53 kDA(-cTP 30.00)(-lTP 24.73)
PI 9.46(-cTP 8.34)(-lTP 7.686)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2145Detail       Total leaf [A. thaliana] total soluble stromawt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help