PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G33495.1   Ubiquitin carboxyl-terminal hydrolase family protein

Lab Annot. RPD1 (ROOT PRIMORDIUM DEFECTIVE 1)
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G06440.1 11Arabidopsis thaliana4E-7336238580 (0)M
AT5G45790.2 11Arabidopsis thaliana4E-7336538600 (0)_
AT5G45790.1 11Arabidopsis thaliana2E-7029342631 (1)M
Os01g43040.1 7Oryza sativa5E-12838852690 (0)S
Os02g26550.1 7Oryza sativa6E-7535238560 (0)M
Os02g26550.2 7Oryza sativa6E-7535238560 (0)M
v1_GRMZM2G417963_P01 4a53Zea mays1E-11739048660 (0)M
GRMZM2G417963_P01 3.21Zea mays1E-11739048660 (0)M
Zm00001eb319060_P001 agpv5Zea mays1E-11739048660 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PORR(1)
TargetP: Mitochondria (Class 3 C0.015; M0.745; S0.030; _0.167)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 409 aa (-cTP 366)
Molecular Weight 48.29 kDA(-cTP )
PI 9.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help