PPDB

 The Plant Proteome Database

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AT4G32940.1   gamma vacuolar processing enzyme
Lab Annot. gamma Vacuolar processing enzyme (gamma-VPE)
Mapman: 29.5.3.2.1* protein.degradation.cysteine protease.CD.C13
Curated Location vacuole (Pubmed: 16043487 )

TAIR curated location: lytic vacuole10417725
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G25940.1 11Arabidopsis thaliana049080880 (0)S
AT1G62710.1 11Arabidopsis thaliana044462741 (0)S
AT3G20210.1 11Arabidopsis thaliana8E-16243253700 (0)S
Os01g37910.1 7Oryza sativa043973850 (0)S
Os01g37910.3 7Oryza sativa043972850 (0)S
Os01g37910.2 7Oryza sativa041172840 (0)_
GRMZM2G093032_P01 3.21Zea mays046969820 (0)M
v1_GRMZM2G093032_P01 4a53Zea mays046969820 (0)M
Zm00001eb162210_P001 agpv5Zea mays046969820 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Peptidase_C13(1) Peptidase_C14(1)
TargetP: Secreted (Class 1 C0.004; M0.159; S0.965; _0.015)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 494 aa (-cTP 470)
Molecular Weight 54.34 kDA(-cTP )
PI 5.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2249Detail       seedlings [A. thaliana] total tissue gfs9
2262Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help