PPDB

 The Plant Proteome Database

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AT4G32770.1   tocopherol cyclase%2C chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
Lab Annot. tocopherol cyclase (VTE1)
Mapman: 16.1.3.4 secondary metabolism.isoprenoids.tocopherol biosynthesis.tocopherol cyclase
Curated Location plastoglobules (Pubmed: 23198870 16461379 16414959 22274653 18431481 ) (supported by in-house exprements)

TAIR curated location: chloroplast inner membrane0012213958
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g17650.1 7Oryza sativa0425678010 (10)C
Os02g17650.2 7Oryza sativa5E-14930067814 (4)M
Zm00001eb237270_P004 agpv5Zea mays047656700 (0)C
Zm00001eb237270_P001 agpv5Zea mays047657710 (0)C
GRMZM2G009785_P03 3.21Zea mays047657718 (8)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Tocopherol_cycl(1)
TargetP: Chloroplast (Class 1 C0.931; M0.090; S0.012; _0.054)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 488 aa (-cTP 390)
Molecular Weight 54.72 kDA(-cTP 43.57)
PI 5.95(-cTP 5.14)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
218Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
221Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
224Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
225Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
226Detail       leaf [A. thaliana] chloroplast plastoglobuleclpr2-1
235Detail       leaf [A. thaliana] plastid plastoglobulewild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
484Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
487Detail       leaf [A. thaliana] chloroplast plastoglobulek2
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
655Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
666Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1-1)
667Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2-1)
668Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3-1)
669Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-1)
670Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 2-1)
671Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-1)
679Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3 (rep. 2-1)
681Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 1-1)
682Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 2-1)
685Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3 (rep. 1-2)
686Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-2)
687Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 2-2)
688Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 3-2)
689Detail       leaf [A. thaliana] chloroplast plastoglobulek3 (rep. 1-2)
692Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1-2)
693Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2-2)
694Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3-2)
771Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1 - 5ug)
773Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2 - 5 ug)
774Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 2- 10 ug)
775Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3 - 5 ug)
776Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 3 - 10 ug)
872Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (1-8); k2k3 (9-10)
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1122Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1123Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1124Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1372Detail       Total leaf 5d ML stress [A. thaliana] chloroplast plastoglobulewild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1513Detail       leaf [A. thaliana] wild-type
1514Detail       leaf [A. thaliana] wild-type
1515Detail       leaf [A. thaliana] wild-type
1516Detail       leaf [A. thaliana] wild-type
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1522Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1524Detail       leaf [A. thaliana] wild-type
1540Detail       leaf [A. thaliana] Thylakoids plastoglobulewild-type
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1542Detail       leaf [A. thaliana] wild-type
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1744Detail        [A. thaliana] Mep-6
1745Detail        [A. thaliana] Col-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1938Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2291Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2308Detail       leaf [A. thaliana] PG plastoglobule 
2309Detail       leaf [A. thaliana] PG plastoglobule 
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
16414959(plastoglubular)
16461379(plastoglubular)
18431481(chloroplast)
19200160(flower-stage 12)
17216043(leaf)
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

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