PPDB

PPDB	The Plant Proteome Database

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AT4G32640.1 Sec23/Sec24 protein transport family protein

Lab Annot.

Sec23/Sec24 protein transport protein
Mapman: 29.3.4.2 protein.targeting.secretory pathway.golgi

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G32640.2 11 Arabidopsis thaliana 0 1080 100 100 40 (16) C
AT3G44340.1 11 Arabidopsis thaliana 0 1130 74 80 61 (32) C
AT3G44340.4 11 Arabidopsis thaliana 0 1130 74 80 0 (0) C
Os11g29200.1 7 Oryza sativa 0 772 69 85 15 (15) _
Os12g24250.1 7 Oryza sativa 0 1038 55 67 6 (6) C
Os04g04020.1 7 Oryza sativa 1E-157 727 38 56 25 (25) _
Zm00001eb169770_P003 agpv5 Zea mays 0 834 67 82 0 (0) C
Zm00001eb169770_P002 agpv5 Zea mays 0 834 67 82 0 (0) C
Zm00001eb169770_P004 agpv5 Zea mays 0 857 66 80 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Gelsolin(1) Sec23_BS(2) Sec23_helical(1) Sec23_trunk(1) zf-Sec23_Sec24(1)
TargetP:	Chloroplast (Class 3 C0.671; M0.097; S0.005; _0.259)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1080 aa (-cTP 1033)
Molecular Weight	116.32 kDA(-cTP 111.44)
PI	8.18(-cTP 8.13)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1447	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 3)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9
2297	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21693672(wound-regulated leaf proteome (AOS mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21433285(purified Plasma membrane -cell_cultures)
21515685(GreenCut2)

Comparative Proteomics Data