PPDB

The Plant Proteome Database

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AT4G32460.1   choice-of-anchor C domain protein%2C putative (Protein of unknown function%2C DUF642)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G32460.2 11Arabidopsis thaliana03651001008 (7)S
AT4G32460.4 11Arabidopsis thaliana03251001000 (0)_
AT4G32460.3 11Arabidopsis thaliana03251001000 (0)_
Os01g42520.1 7Oryza sativa6E-17234367800 (0)S
Os02g11040.1 7Oryza sativa3E-16436462790 (0)S
Os04g41759.1 7Oryza sativa1E-15135957740 (0)S
Zm00001eb235330_P001 agpv5Zea mays3E-16733264830 (0)S
v1_GRMZM2G012904_P01 4a53Zea mays3E-16733264830 (0)S
GRMZM2G012904_P01 3.21Zea mays3E-16733264830 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CBM_4_9(2) DUF642(2)
TargetP: Secreted (Class 1 C0.005; M0.011; S0.991; _0.116)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 365 aa (-cTP 315)
Molecular Weight 39.82 kDA(-cTP )
PI 8.17(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

17526915(glycoproteome cell wall (stems))
18796151(cell wall (hypocotyl))
19334764(plasma membrane (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help