PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G31700.2   ribosomal protein S6
Lab Annot. 40S ribosomal protein S6 (RPS6A) (eS6z)
Mapman: 29.2.1.2.1.6 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G31700.1 11Arabidopsis thaliana4E-132188100100361 (258)_
AT5G10360.1 11Arabidopsis thaliana3E-1221849597243 (156)_
AT5G10360.2 11Arabidopsis thaliana4E-76184707110 (9)_
Os03g27260.1 7Oryza sativa9E-108180869331 (31)_
Os07g42950.1 7Oryza sativa7E-102174889354 (54)_
GRMZM2G054136_P02 3.21Zea mays2E-107188849014 (14)_
v1_GRMZM2G054136_P02 4a53Zea mays2E-107188849012 (12)_
GRMZM2G054136_P08 3.21Zea mays8E-107188849015 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Atg14(1) Ribosomal_S6e(1)
TargetP: Mitochondria (Class 2 C0.051; M0.870; S0.004; _0.166)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 188 aa (-cTP 150)
Molecular Weight 21.39 kDA(-cTP )
PI 11.46(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1494Detail       leaf [A. thaliana]  
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1536Detail       leaf [A. thaliana] wild-type
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1711Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1712Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1713Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1716Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2210Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII st28
2222Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2237Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2244Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 17317660(Plasma Membrane proteome)
18538804(total leaf)
17934214(cytosolic ribosome)
17432890(leaf total membranes)
18463617(suspension cells-phosphorylated proteins)
18814325(cotyledons)
19200160(flower-stage 12)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19334764(plasma membrane (cell culture))
19888209(80S polysomal fraction)
19888209(leaves)
19376835(leaf phosphoproteins)
18686298(tonoplast - phosphoproteome (leaves))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
22010978(Endosomal-sorting-interactome-VPS2.2)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21841088(mitochondria (2DE native gel))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
22430844(Golgi-cell-culture)
21768351(Leaf-Phosphoproteome)
21988472(vacuole (unfiltered data))
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help