PPDB

The Plant Proteome Database

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AT4G31570.1   nucleoporin

Lab Annot. unknown protein
Mapman: 28.1 DNA.synthesis/chromatin structure
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G31570.7 11Arabidopsis thaliana027301001000 (0)_
AT4G31570.5 11Arabidopsis thaliana0273099990 (0)_
AT4G31570.2 11Arabidopsis thaliana0273098990 (0)_
Os02g05490.1 7Oryza sativa3E-7851737570 (0)_
Os02g38480.1 7Oryza sativa1E-1317631516 (6)C
v1_GRMZM2G024612_P01 4a53Zea mays0153034540 (0)_
Zm00001eb232290_P002 agpv5Zea mays0153034540 (0)_
Zm00001eb232290_P003 agpv5Zea mays0153034540 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HAUS-augmin3(11) Nup54(9) SOGA(4)
TargetP: Cytoplasm (Class 3 C0.204; M0.152; S0.007; _0.655)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 2730 aa (-cTP 2666)
Molecular Weight 305.91 kDA(-cTP )
PI 4.71(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
2248Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


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