PPDB

The Plant Proteome Database

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AT4G31560.1   high chlorophyll fluorescence 153

Lab Annot. HCF153 - biogenesis cytb6 complex
Mapman: 29.8 protein.protein assembly and cofactor ligation
Curated Location thylakoid-integral (Pubmed: 23198870 16367957 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g71330.1 7Oryza sativa2E-1010341590 (0)C
v1_GRMZM2G361688_P01 4a53Zea mays2E-075343713 (3)M
Zm00001eb363190_P002 agpv5Zea mays2E-075343710 (0)C
Zm00001eb363190_P001 agpv5Zea mays2E-075343710 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 2 C0.820; M0.078; S0.010; _0.069)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position: 45
Length 137 aa (-cTP 89) (-lTP 69)
Molecular Weight 14.70 kDA(-cTP 9.62)(-lTP 7.60)
PI 5.11(-cTP 4.57)(-lTP 4.724)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21311031(chloroplasts)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help