PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G31210.1   DNA topoisomerase%2C type IA%2C core
Lab Annot. DNA-directed DNA polymerase- dually targeted mitochondria & plastid
Mapman: 28.1.5* DNA.synthesis/chromatin structure.synthesis
Curated Location plastid nucleoid (Pubmed: 23198870 19036033 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G31210.3 11Arabidopsis thaliana0128499990 (0)C
AT4G31210.2 11Arabidopsis thaliana012381001000 (0)C
AT5G63920.1 11Arabidopsis thaliana3E-2061322380 (0)M
Os06g16980.2 7Oryza sativa086259728 (8)M
Os06g16980.1 7Oryza sativa086259728 (8)M
Os02g27440.2 7Oryza sativa1E-11228757750 (0)_
Zm00001eb380580_P003 agpv5Zea mays082164770 (0)M
Zm00001eb280820_P001 agpv5Zea mays080463770 (0)M
Zm00001eb380580_P001 agpv5Zea mays070461750 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Topoisom_bac(1) Toprim(1) Toprim_3(1) Toprim_4(2) Toprim_C_rpt(2) zf-C4_Topoisom
TargetP: Chloroplast (Class 5 C0.205; M0.080; S0.009; _0.167)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1284 aa (-cTP 1247)
Molecular Weight 141.56 kDA(-cTP 137.59)
PI 9.39(-cTP 9.34)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1294Detail       leaf [A. thaliana] co-IP cGEP (rep. 2) stromawild-type
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 20423899(chloroplast)
22060019(phosphoproteome - N-starved seedlings)
21311031(mitochondria)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help