PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G30950.1   fatty acid desaturase 6
Lab Annot. FD6C = omega-6 fatty acid desaturase 'chloroplast omega-6 fatty acid desaturase (fad6)
Mapman: 11.2.4 lipid metabolism.FA desaturation.omega 6 desaturase
Curated Location envelope-inner-integral (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G05580.1 11Arabidopsis thaliana8E-2834027440 (0)C
AT5G05580.2 11Arabidopsis thaliana3E-2633426440 (0)C
AT2G29980.1 11Arabidopsis thaliana4E-2525929460 (0)_
Os08g34220.1 7Oryza sativa0405738625 (25)C
Os07g49310.1 7Oryza sativa9E-2933829434 (4)M
Os03g18070.1 7Oryza sativa4E-28307294549 (49)M
v1_GRMZM2G078569_P03 4a53Zea mays0396768724 (24)C
GRMZM2G078569_P01 3.21Zea mays0396768726 (26)C
Zm00001eb041150_P001 agpv5Zea mays039676870 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FA_desaturase(1)
TargetP: Chloroplast (Class 2 C0.853; M0.117; S0.017; _0.078)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 2 TMs
Aramemnon: 3 TMs
TAT position: 54
Length 448 aa (-cTP 370) (-lTP 367)
Molecular Weight 51.23 kDA(-cTP 42.97)(-lTP 42.69)
PI 9.01(-cTP 6.71)(-lTP 6.880)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
873Detail       leaf [A. thaliana] chloroplast stromawild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 12938931(Total chloroplast envelope)
12766230(Total chloroplast envelope)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help