PPDB

 The Plant Proteome Database

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AT4G30800.1   Nucleic acid-binding%2C OB-fold-like protein
Lab Annot. 40S ribosomal protein S11 (RPS11B) (uS17y)
Mapman: 29.2.1.2.1.11 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G23740.1 11Arabidopsis thaliana4E-98159919669 (59)_
AT3G48930.1 11Arabidopsis thaliana5E-97160939661 (51)_
Os08g10608.1 7Oryza sativa2E-9115887940 (0)_
Os04g42380.1 7Oryza sativa3E-9115987930 (0)_
Os04g52361.1 7Oryza sativa1E-87146939710 (10)_
Zm00001eb078130_P001 agpv5Zea mays8E-9915986920 (0)_
v1_GRMZM2G086486_P01 4a53Zea mays8E-99159869210 (10)_
GRMZM2G086486_P02 3.21Zea mays3E-94159869212 (11)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_S17(1) Ribosomal_S17_N(1)
TargetP: Cytoplasm (Class 2 C0.188; M0.114; S0.044; _0.833)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 159 aa (-cTP 142)
Molecular Weight 17.93 kDA(-cTP )
PI 10.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1538Detail       leaf [A. thaliana] plastid RNCs thylakoid membranewild-type
1748Detail       leaf [A. thaliana] total leaf tissue Col_0
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2013Detail       leaf [A. thaliana] total leaf tissue wt
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2239Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 17934214(cytosolic ribosome)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help