PPDB

 The Plant Proteome Database

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AT4G30690.1   Translation initiation factor 3 protein
Lab Annot. translation initiation factor 3 (IF-3) protein
Mapman: 29.2.3 protein.synthesis.initiation
Curated Location plastid stroma (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G30690.2 11Arabidopsis thaliana0281909063 (37)C
AT2G24060.1 11Arabidopsis thaliana8E-1322707987254 (62)C
AT1G34360.3 11Arabidopsis thaliana2E-0813132550 (0)M
Os02g55120.1 7Oryza sativa4E-63194577814 (14)M
Os02g01110.1 7Oryza sativa3E-0813930531 (1)M
Zm00001eb257720_P002 agpv5Zea mays3E-6418462796 (6)C
Zm00001eb257720_P001 agpv5Zea mays3E-6418462796 (6)C
Zm00001eb257720_P003 agpv5Zea mays3E-6418462796 (6)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: IF3_C(1) IF3_N(2)
TargetP: Chloroplast (Class 2 C0.782; M0.070; S0.060; _0.136)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 281 aa (-cTP 267)
Molecular Weight 31.82 kDA(-cTP 30.45)
PI 9.55(-cTP 9.55)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
641Detail        [A. thaliana] plastid nucleoid (crude) wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type
1177Detail       leaf [A. thaliana] co-IP OEC23 stromawild-type
1180Detail       leaf [A. thaliana] co-IP OEC23 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1199Detail       leaf [A. thaliana] co-IP OEC23 stromaclpr2-1
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
1664Detail        [A. thaliana]  
1665Detail        [A. thaliana]  
1667Detail        [A. thaliana]  
1670Detail        [A. thaliana]  
1671Detail        [A. thaliana]  
1672Detail        [A. thaliana]  
1693Detail        [A. thaliana] uvr
1700Detail        [A. thaliana] Col-0
1701Detail        [A. thaliana] cGep
1702Detail        [A. thaliana] Col-0
1703Detail        [A. thaliana] cGep
1708Detail        [A. thaliana] Wild-type
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2296Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15593128(Cell Wall proteome)
18431481(chloroplast)
18436743(specific to leaves)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21693672(wound-regulated leaf proteome (wt))

Comparative Proteomics Data

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