PPDB

PPDB	The Plant Proteome Database

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AT4G30400.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G18650.1 11 Arabidopsis thaliana 4E-162 465 61 69 0 (0) C
AT5G40250.1 11 Arabidopsis thaliana 6E-73 408 40 52 0 (0) _
AT5G57750.1 11 Arabidopsis thaliana 3E-55 193 51 69 0 (0) _
Os08g34550.1 7 Oryza sativa 6E-95 480 44 55 0 (0) _
Os02g54830.1 7 Oryza sativa 1E-80 481 39 53 0 (0) _
Os02g50930.1 7 Oryza sativa 1E-58 375 39 50 0 (0) M
Zm00001eb177000_P001 agpv5 Zea mays 4E-86 462 43 55 0 (0) _
GRMZM6G174411_P01 3.21 Zea mays 4E-86 462 43 55 0 (0) _
Zm00001eb257520_P001 agpv5 Zea mays 8E-81 470 41 53 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FANCL_C(1) Prok-RING_4(1) RINGv(1) Yip1(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(
TargetP:	Chloroplast (Class 5 C0.363; M0.076; S0.029; _0.240)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	472 aa (-cTP 436)
Molecular Weight	52.34 kDA(-cTP 48.09)
PI	6.16(-cTP 5.98)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data