PPDB

PPDB	The Plant Proteome Database

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AT4G30370.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G18670.1 11 Arabidopsis thaliana 1E-37 145 53 63 0 (0) _
AT4G09100.1 11 Arabidopsis thaliana 2E-15 126 33 46 0 (0) S
AT2G27940.1 11 Arabidopsis thaliana 3E-15 135 33 51 0 (0) _
Os06g34620.1 7 Oryza sativa 8E-16 126 31 46 0 (0) _
Os01g11460.1 7 Oryza sativa 3E-15 74 43 58 0 (0) M
Os12g24490.1 7 Oryza sativa 9E-15 75 44 56 0 (0) _
Zm00001eb280310_P001 agpv5 Zea mays 2E-18 140 36 49 0 (0) S
GRMZM2G324375_P01 3.21 Zea mays 2E-18 140 36 49 0 (0) S
v1_GRMZM2G324375_P01 4a53 Zea mays 2E-18 140 36 49 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	FANCL_C(1) Prok-RING_1(2) Prok-RING_4(1) zf-ANAPC11(1) zf-C3H2C3(1) zf-C3HC4(1)
TargetP:	Cytoplasm (Class 3 C0.160; M0.039; S0.311; _0.877)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	176 aa (-cTP 83)
Molecular Weight	20.77 kDA(-cTP )
PI	9.74(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data