PPDB

The Plant Proteome Database

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AT4G30220.2   small nuclear ribonucleoprotein F

Lab Annot.
Mapman:
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G30220.1 11Arabidopsis thaliana6E-5988979852 (49)_
AT2G14285.1 11Arabidopsis thaliana2E-38611001001 (1)_
AT2G43810.3 11Arabidopsis thaliana6E-176646680 (0)_
Os11g43620.1 7Oryza sativa8E-528686941 (1)_
Os11g43620.2 7Oryza sativa1E-508486941 (1)_
Os02g08090.1 7Oryza sativa1E-346186930 (0)_
GRMZM2G058252_P03 3.21Zea mays1E-529379904 (4)S
v1_GRMZM2G168252_P01 4a53Zea mays1E-518684948 (8)_
Zm00001eb206810_P001 agpv5Zea mays1E-518684940 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: INSC_LBD(1) LSM(1) SM-ATX(1)
TargetP: Cytoplasm (Class 4 C0.180; M0.072; S0.308; _0.560)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 96 aa (-cTP 67)
Molecular Weight 10.79 kDA(-cTP )
PI 4.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2257Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


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