PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G29610.1   Cytidine/deoxycytidylate deaminase family protein

Lab Annot. cytidine deaminase, cytidine aminohydrolase
Mapman: 23.2 nucleotide metabolism.degradation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29600.1 11Arabidopsis thaliana1E-12329263740 (0)_
AT4G29620.1 11Arabidopsis thaliana1E-11029160710 (0)_
AT2G19570.1 11Arabidopsis thaliana9E-110293566713 (5)_
Os01g51540.1 7Oryza sativa5E-58270466112 (12)_
Os06g40910.1 7Oryza sativa2E-3519841560 (0)M
Zm00001eb361370_P001 agpv5Zea mays3E-6626747610 (0)_
Zm00001eb155060_P001 agpv5Zea mays1E-6126845590 (0)_
v1_GRMZM2G380088_P01 4a53Zea mays1E-6126845591 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: dCMP_cyt_deam_1(2) dCMP_cyt_deam_2(2)
TargetP: Cytoplasm (Class 1 C0.112; M0.045; S0.069; _0.919)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 293 aa (-cTP 256)
Molecular Weight 32.04 kDA(-cTP )
PI 5.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help