PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G29330.1   DERLIN-1
Lab Annot. Derlin-domain (required for degradation)
Mapman: 29.5 protein.degradation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29330.2 11Arabidopsis thaliana1E-1452041001000 (0)_
AT4G04860.1 11Arabidopsis thaliana1E-4723537560 (0)_
AT4G21810.1 11Arabidopsis thaliana9E-4623537550 (0)_
Os05g09550.1 7Oryza sativa1E-11426765748 (8)_
Os05g09550.2 7Oryza sativa2E-10420473830 (0)_
Os05g09550.3 7Oryza sativa3E-7619364738 (8)_
GRMZM2G117388_P05 3.21Zea mays2E-11026662731 (1)_
GRMZM2G117388_P01 3.21Zea mays2E-11026662731 (1)_
v1_GRMZM2G117388_P01 4a53Zea mays2E-11026662730 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DER1(1)
TargetP: Cytoplasm (Class 2 C0.008; M0.157; S0.125; _0.878)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 6 TMs
TAT position:
Length 266 aa (-cTP 194)
Molecular Weight 29.21 kDA(-cTP )
PI 9.95(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2245Detail       seedlings [A. thaliana] total tissue wild-type
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help