PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G28840.1   mediator of RNA polymerase II transcription subunit

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G28840.2 11Arabidopsis thaliana7E-1201651001000 (0)C
AT4G28840.3 11Arabidopsis thaliana1E-971391001000 (0)C
AT2G20080.1 11Arabidopsis thaliana4E-6620260700 (0)C
Os05g48570.1 7Oryza sativa1E-0819233430 (0)_
Os01g48530.1 7Oryza sativa3E-065957620 (0)C
Zm00001eb156860_P001 agpv5Zea mays5E-1017533460 (0)_
GRMZM2G076064_P01 3.21Zea mays3E-0917633460 (0)_
v1_GRMZM2G076064_P01 4a53Zea mays3E-0917633460 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 2 C0.880; M0.175; S0.012; _0.111)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 193 aa (-cTP 138)
Molecular Weight 21.41 kDA(-cTP 15.72)
PI 7.89(-cTP 5.18)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help