PPDB

 The Plant Proteome Database

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AT4G28780.1   GDSL-like Lipase/Acylhydrolase superfamily protein
Lab Annot. GDSL-motif lipase/hydrolase protein
Mapman: 26.28 misc.GDSL-motif lipase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G04290.1 11Arabidopsis thaliana1E-174350688043 (29)S
AT5G33370.1 11Arabidopsis thaliana3E-17135265802 (1)S
AT5G18430.1 11Arabidopsis thaliana2E-16733667810 (0)S
Os02g40440.1 7Oryza sativa1E-16833565810 (0)S
Os04g42860.1 7Oryza sativa8E-16133663803 (3)S
Os02g57110.1 7Oryza sativa4E-15934261782 (2)S
v1_GRMZM2G148867_P02 4a53Zea mays3E-17133864810 (0)M
GRMZM2G148867_P02 3.21Zea mays3E-17133864810 (0)M
Zm00001eb038610_P001 agpv5Zea mays3E-17133864810 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Hexapep_2(2) Lipase_GDSL(1)
TargetP: Secreted (Class 1 C0.006; M0.039; S0.977; _0.023)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 367 aa (-cTP 314)
Molecular Weight 39.90 kDA(-cTP )
PI 4.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help