PPDB

The Plant Proteome Database

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AT4G28770.1   Tetraspanin family protein

Lab Annot. Tetraspanin family
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G28770.2 11Arabidopsis thaliana028110010018 (18)M
AT2G20230.1 11Arabidopsis thaliana2E-1312817281140 (126)S
AT2G20740.1 11Arabidopsis thaliana8E-3722131500 (0)S
Os06g51480.1 7Oryza sativa5E-3717741630 (0)M
Os08g18044.2 7Oryza sativa2E-3128530496 (6)S
Os04g58330.1 7Oryza sativa5E-3011344680 (0)M
Zm00001eb024230_P002 agpv5Zea mays3E-3628732480 (0)S
v1_GRMZM2G049422_P01 4a53Zea mays3E-3628732488 (7)S
v1_GRMZM2G049422_P02 4a53Zea mays3E-3628732488 (7)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Tetraspanin(3)
TargetP: Secreted (Class 1 C0.007; M0.030; S0.912; _0.044)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 281 aa (-cTP 228)
Molecular Weight 30.98 kDA(-cTP )
PI 4.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1555Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1614Detail       Natural Senescence leaf [A. thaliana]  
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
17151019(vacuole - suspension cell)
17432890(leaf total membranes)
17660356(tonoplast (Brassica oleracea buds))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


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